Publications

Found 41 results
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2012
Li F, Pignatta D, Bendix C, Brunkard JO, Cohn MM, Tung J, Sun H, Kumar P, Baker B.  2012.  MicroRNA regulation of plant innate immune receptors. Proceedings of the National Academy of Sciences of the United States of America. 109(5):1790-5.
Li F, Orban R, Baker B.  2012.  SoMART: a web server for plant miRNA, tasiRNA and target gene analysis. The Plant journal : for cell and molecular biology. 70(5):891-901.
2009
Kuang H, Padmanabhan C, Li F, Kamei A, Bhaskar PB, Ouyang S, Jiang J, Buell RC, Baker B.  2009.  Identification of miniature inverted-repeat transposable elements (MITEs) and biogenesis of their siRNAs in the Solanaceae: new functional implications for MITEs. Genome research. 19(1):42-56.
2007
Zhang LH, Mojtahedi H, Kuang, H, Baker, B, Brown CR.  2007.  Marker-assisted selection of Columbia Root-Knot nematode resistance introgressed from Solanum bulbocastanum. Crop Science. 47:2021-2026.
2005
Huang S, van der Vossen EAG, Kuang H, Vleeshouwers VGAA, Zhang N, Borm TJA, van Eck HJ, Baker B, Jacobsen E, Visser RGF.  2005.  Comparative genomics enabled the isolation of the R3a late blight resistance gene in potato. The Plant journal : for cell and molecular biology. 42(2):251-61.
Hu G, deHart AKA, Li Y, Ustach C, Handley V, Navarre R, Hwang C-F, Aegerter BJ, Williamson VM, Baker B.  2005.  EDS1 in tomato is required for resistance mediated by TIR-class R genes and the receptor-like R gene Ve. The Plant journal : for cell and molecular biology. 42(3):376-91.
Kuang H, Wei F, Marano M R, Wirtz U, Wang X, Liu J, Shum W P, Zaborsky J, Tallon LJ, Rensink W et al..  2005.  The R1 resistance gene cluster contains three groups of independently evolving, type I R1 homologues and shows substantial structural variation among haplotypes of Solanum demissum. The Plant journal : for cell and molecular biology. 44(1):37-51.
2004
Schornack S, Ballvora A, Gürlebeck D, Peart J, Baulcombe D, Ganal M, Baker B, Bonas U, Lahaye T.  2004.  The tomato resistance protein Bs4 is a predicted non-nuclear TIR-NB-LRR protein that mediates defense responses to severely truncated derivatives of AvrBs4 and overexpressed AvrBs3. The Plant journal : for cell and molecular biology. 37(1):46-60.
Brigneti G, Martín-Hernández AM, Jin H, Chen J, Baulcombe DC, Baker B, Jones JDG.  2004.  Virus-induced gene silencing in Solanum species. The Plant journal : for cell and molecular biology. 39(2):264-72.
Rojo E, Martín R, Carter C, Zouhar J, Pan S, Plotnikova J, Jin H, Paneque M, Sánchez-Serrano J J, Baker B et al..  2004.  VPEgamma exhibits a caspase-like activity that contributes to defense against pathogens. Current biology : CB. 14(21):1897-906.
2003
Ronning CM, Stegalkina SS, Ascenzi RA, Bougri O, Hart AL, Utterbach TR, Vanaken SE, Riedmuller SB, White JA, Cho J et al..  2003.  Comparative analyses of potato expressed sequence tag libraries. Plant physiology. 131(2):419-29.
Jin H, Liu Y, Yang K-Y, Kim C Y, Baker B, Zhang S.  2003.  Function of a mitogen-activated protein kinase pathway in N gene-mediated resistance in tobacco. The Plant journal : for cell and molecular biology. 33(4):719-31.
Liu Y, Jin H, Yang K-Y, Kim C Y, Baker B, Zhang S.  2003.  Interaction between two mitogen-activated protein kinases during tobacco defense signaling. The Plant journal : for cell and molecular biology. 34(2):149-60.
2001
Ballvora A, Schornack S, Baker BJ, Ganal M, Bonas U, Lahaye T.  2001.  Chromosome landing at the tomato Bs4 locus. Molecular genetics and genomics : MGG. 266(4):639-45.
2000
Dinesh-Kumar SP, Baker BJ.  2000.  Alternatively spliced N resistance gene transcripts: their possible role in tobacco mosaic virus resistance. Proceedings of the National Academy of Sciences of the United States of America. 97(4):1908-13.
Dinesh-Kumar SP, Tham WH, Baker BJ.  2000.  Structure-function analysis of the tobacco mosaic virus resistance gene N. Proceedings of the National Academy of Sciences of the United States of America. 97(26):14789-94.
1999
Erickson FL, Holzberg S, Calderon-Urrea A, Handley V, Axtell M, Corr C, Baker B.  1999.  The helicase domain of the TMV replicase proteins induces the N-mediated defence response in tobacco. The Plant journal : for cell and molecular biology. 18(1):67-75.
Erickson FL, Dinesh-Kumar SP, Holzberg S, Ustach CV, Dutton M, Handley V, Corr C, Baker BJ.  1999.  Interactions between tobacco mosaic virus and the tobacco N gene. Philosophical transactions of the Royal Society of London. Series B, Biological sciences. 354(1383):653-8.
1997
Wirtz U, Osborne B, Baker B.  1997.  Ds excision from extrachromosomal geminivirus vector DNA is coupled to vector DNA replication in maize. The Plant journal : for cell and molecular biology. 11(1):125-35.
1996
Whitham S, McCormick S, Baker B.  1996.  The N gene of tobacco confers resistance to tobacco mosaic virus in transgenic tomato. Proceedings of the National Academy of Sciences of the United States of America. 93(16):8776-81.
1995
Osborne BI, Baker B.  1995.  Movers and shakers: maize transposons as tools for analyzing other plant genomes. Current opinion in cell biology. 7(3):406-13.
Osborne BI, Wirtz U, Baker B.  1995.  A system for insertional mutagenesis and chromosomal rearrangement using the Ds transposon and Cre-lox. The Plant journal : for cell and molecular biology. 7(4):687-701.
Dinesh-Kumar SP, Whitham S, Choi D, Hehl R, Corr C, Baker B.  1995.  Transposon tagging of tobacco mosaic virus resistance gene N: its possible role in the TMV-N-mediated signal transduction pathway. Proceedings of the National Academy of Sciences of the United States of America. 92(10):4175-80.
1994
Whitham S, Dinesh-Kumar SP, Choi D, Hehl R, Corr C, Baker B.  1994.  The product of the tobacco mosaic virus resistance gene N: similarity to toll and the interleukin-1 receptor. Cell. 78(6):1101-15.
1993
Honma MA, Baker BJ, Waddell CS.  1993.  High-frequency germinal transposition of DsALS in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 90(13):6242-6.
Healy J, Corr C, DeYoung J, Baker B.  1993.  Linked and unlinked transposition of a genetically marked Dissociation element in transgenic tomato. Genetics. 134(2):571-84.
1991
Osborne BI, Corr CA, Prince JP, Hehl R, Tanksley SD, McCormick S, Baker B.  1991.  Ac transposition from a T-DNA can generate linked and unlinked clusters of insertions in the tomato genome. Genetics. 129(3):833-44.
1990
Earp DJ, Lowe B, Baker B.  1990.  Amplification of genomic sequences flanking transposable elements in host and heterologous plants: a tool for transposon tagging and genome characterization. Nucleic acids research. 18(11):3271-9.
Hehl R, Baker B.  1990.  Properties of the maize transposable element Activator in transgenic tobacco plants: a versatile inter-species genetic tool. The Plant cell. 2(8):709-21.
Laufs J, Wirtz U, Kammann M, Matzeit V, Schaefer S, Schell J, Czernilofsky AP, Baker B, Gronenborn B.  1990.  Wheat dwarf virus Ac/Ds vectors: expression and excision of transposable elements introduced into various cereals by a viral replicon. Proceedings of the National Academy of Sciences of the United States of America. 87(19):7752-6.
1989
Hehl R, Baker B.  1989.  Induced transposition of Ds by a stable Ac in crosses of transgenic tobacco plants. Molecular & general genetics : MGG. 217(1):53-9.
1988
Coupland G, Baker B, Schell J, Starlinger P.  1988.  Characterization of the maize transposable element Ac by internal deletions. The EMBO journal. 7(12):3653-9.
1987
Baker B, Coupland G, Fedoroff N, Starlinger P, Schell J.  1987.  Phenotypic assay for excision of the maize controlling element Ac in tobacco. The EMBO journal. 6(6):1547-54.
1986
Czernilofsky AP, Hain R, Herrera-Estrella L, Lörz H, Goyvaerts E, Baker BJ, Schell J.  1986.  Fate of selectable marker DNA integrated into the genome of Nicotiana tabacum. DNA (Mary Ann Liebert, Inc.). 5(2):101-13.
Czernilofsky AP, Hain R, Baker B, Wirtz U.  1986.  Studies of the structure and functional organization of foreign DNA integrated into the genome of Nicotiana tabacum. DNA (Mary Ann Liebert, Inc.). 5(6):473-82.
Baker B, Schell J, Lörz H, Fedoroff N.  1986.  Transposition of the maize controlling element "Activator" in tobacco. Proceedings of the National Academy of Sciences of the United States of America. 83(13):4844-8.
1985
Schell J, Kaulen H, Kreuzaler F, Eckes P, Rosahl S, Willmitzer L, Spena A, Baker B, Herrera-Estrella L, Fedoroff N.  1985.  Transfer and regulation of expression of chimeric genes in plants. Cold Spring Harbor symposia on quantitative biology. 50:421-31.
1981
Baker B, Robison H, Varmus HE, Bishop JM.  1981.  Analysis of endogenous avian retrovirus DNA and RNA: viral and cellular determinants of retrovirus gene expression. Virology. 114(1):8-22.
1978
Spector DH, Baker B, Varmus HE, Bishop JM.  1978.  Characteristics of cellular RNA related to the transforming gene of avian sarcoma viruses. Cell. 13(2):381-6.
Bishop JM, Baker B, Fujita D, McCombe P, Sheiness D, Smith K, Spector DH, Stehelin D, Varmus HE.  1978.  Genesis of a virus-transforming gene. National Cancer Institute monograph. (48):219-23.
1977
Friedrich R, Kung HJ, Baker B, Varmus HE, Goodman HM, Bishop JM.  1977.  Characterization of DNA complementary to nucleotide sequences at the 5'-terminus of the avian sarcoma virus genome. Virology. 79(1):198-215.