Publications

Czernilofsky AP, Hain R, Herrera-Estrella L, Lörz H, Goyvaerts E, Baker BJ, Schell J.  1986.  Fate of selectable marker DNA integrated into the genome of Nicotiana tabacum. DNA (Mary Ann Liebert, Inc.). 5(2):101-13.

Baker B, Schell J, Lörz H, Fedoroff N.  1986.  Transposition of the maize controlling element "Activator" in tobacco. Proceedings of the National Academy of Sciences of the United States of America. 83(13):4844-8.

Earp DJ, Lowe B, Baker B.  1990.  Amplification of genomic sequences flanking transposable elements in host and heterologous plants: a tool for transposon tagging and genome characterization. Nucleic acids research. 18(11):3271-9.

Laufs J, Wirtz U, Kammann M, Matzeit V, Schaefer S, Schell J, Czernilofsky AP, Baker B, Gronenborn B.  1990.  Wheat dwarf virus Ac/Ds vectors: expression and excision of transposable elements introduced into various cereals by a viral replicon. Proceedings of the National Academy of Sciences of the United States of America. 87(19):7752-6.

Ballvora A, Schornack S, Baker BJ, Ganal M, Bonas U, Lahaye T.  2001.  Chromosome landing at the tomato Bs4 locus. Molecular genetics and genomics : MGG. 266(4):639-45.

Ronning CM, Stegalkina SS, Ascenzi RA, Bougri O, Hart AL, Utterbach TR, Vanaken SE, Riedmuller SB, White JA, Cho J et al..  2003.  Comparative analyses of potato expressed sequence tag libraries. Plant physiology. 131(2):419-29.

Jin H, Liu Y, Yang K-Y, Kim C Y, Baker B, Zhang S.  2003.  Function of a mitogen-activated protein kinase pathway in N gene-mediated resistance in tobacco. The Plant journal : for cell and molecular biology. 33(4):719-31. Jin et al. MEKK1-like in Plant Innate Immunity.Dev Cell.2002.pdf (1.03 MB)

Liu Y, Jin H, Yang K-Y, Kim C Y, Baker B, Zhang S.  2003.  Interaction between two mitogen-activated protein kinases during tobacco defense signaling. The Plant journal : for cell and molecular biology. 34(2):149-60. Liu et al. WIPK SIPK Resistance.PJ_.2003.pdf (291.67 KB)

Schornack S, Ballvora A, Gürlebeck D, Peart J, Baulcombe D, Ganal M, Baker B, Bonas U, Lahaye T.  2004.  The tomato resistance protein Bs4 is a predicted non-nuclear TIR-NB-LRR protein that mediates defense responses to severely truncated derivatives of AvrBs4 and overexpressed AvrBs3. The Plant journal : for cell and molecular biology. 37(1):46-60.

Hu G, deHart AKA, Li Y, Ustach C, Handley V, Navarre R, Hwang C-F, Aegerter BJ, Williamson VM, Baker B.  2005.  EDS1 in tomato is required for resistance mediated by TIR-class R genes and the receptor-like R gene Ve. The Plant journal : for cell and molecular biology. 42(3):376-91. Hu et al.EDS1TIR-RLP ResistanceTomato.PJ_.2005.pdf (943.43 KB)

Kuang H, Wei F, Marano M R, Wirtz U, Wang X, Liu J, Shum W P, Zaborsky J, Tallon LJ, Rensink W et al..  2005.  The R1 resistance gene cluster contains three groups of independently evolving, type I R1 homologues and shows substantial structural variation among haplotypes of Solanum demissum. The Plant journal : for cell and molecular biology. 44(1):37-51.

Kuang H, Wei F, Marano M R, Wirtz U, Wang X, Liu J, Shum W P, Zaborsky J, Tallon LJ, Rensink W et al..  2005.  The R1 resistance gene cluster contains three groups of independently evolving, type I R1 homologues and shows substantial structural variation among haplotypes of Solanum demissum. The Plant journal : for cell and molecular biology. 44(1):37-51.

Kuang H, Wei F, Marano M R, Wirtz U, Wang X, Liu J, Shum W P, Zaborsky J, Tallon LJ, Rensink W et al..  2005.  The R1 resistance gene cluster contains three groups of independently evolving, type I R1 homologues and shows substantial structural variation among haplotypes of Solanum demissum. The Plant journal : for cell and molecular biology. 44(1):37-51.

Kuang H, Padmanabhan C, Li F, Kamei A, Bhaskar PB, Ouyang S, Jiang J, Buell RC, Baker B.  2009.  Identification of miniature inverted-repeat transposable elements (MITEs) and biogenesis of their siRNAs in the Solanaceae: new functional implications for MITEs. Genome research. 19(1):42-56. Kuang et al.Sol-MITEs Transposons_Function.GenRes.2009.pdf (892.26 KB)

Li F, Pignatta D, Bendix C, Brunkard JO, Cohn MM, Tung J, Sun H, Kumar P, Baker B.  2012.  MicroRNA regulation of plant innate immune receptors. Proceedings of the National Academy of Sciences of the United States of America. 109(5):1790-5. Li et al. miRNA.Innate.Immune.Receptors.PNAS_.2012.pdf (3.95 MB)

Li F, Orban R, Baker B.  2012.  SoMART: a web server for plant miRNA, tasiRNA and target gene analysis. The Plant journal : for cell and molecular biology. 70(5):891-901. Li et al.SoMART.Server.miRNA_.PJ_.2012.pdf (1.41 MB)

Shi Y-F, Wang D-L, Wang C, Culler A H, Kreiser MA, Suresh J, Cohen JD, Pan J, Baker B, Liu J-Z.  2015.  Loss of GSNOR1 Function Leads to Compromised Auxin Signaling and Polar Auxin Transport. Molecular plant. 8(9):1350-65. GSNOR1.Mol_.Plant_.2015.pdf (654.61 KB)

Deng Y, Wang J, Tung J, Liu D, Zhou Y, He S, Du Y, Baker B, Li F.  2018.  A role for small RNA in regulating innate immunity during plant growth.. PLoS Pathog. 14(1):e1006756.

Deng Y, Wang J, Tung J, Liu D, Zhou Y, He S, Du Y, Baker B, Li F.  2018.  A role for small RNA in regulating innate immunity during plant growth.. PLoS Pathog. 14(1):e1006756.

Deng Y, Wang J, Tung J, Liu D, Zhou Y, He S, Du Y, Baker B, Li F.  2018.  A role for small RNA in regulating innate immunity during plant growth. PLOS Pathogens. 14(1) Deng et al. sRNA Regulating Innate Immunity PLOS Pathogens.pdf (856.94 KB)

Deng Y, Wang J, Tung J, Liu D, Zhou Y, He S, Du Y, Baker B, Li F.  2018.  A role for small RNA in regulating innate immunity during plant growth. PLOS Pathogens. 14(1) Deng et al. sRNA Regulating Innate Immunity PLOS Pathogens.pdf (856.94 KB)

Liang C, Hao J, Li J, Baker B, Luo L.  2019.  Artificial microRNA-mediated resistance to cucumber green mottle mosaic virus in Nicotiana benthamiana.. Planta. 250(5):1591-1601.

Liang C, Hao J, Li J, Baker B, Luo L.  2019.  Artificial microRNA-mediated resistance to cucumber green mottle mosaic virus in Nicotiana benthamiana.. Planta. 250(5):1591-1601.

Liang C, Hao J, Li J, Baker B, Luo L.  2019.  Artificial microRNA-mediated resistance to cucumber green mottle mosaic virus in Nicotiana benthamiana.. Planta. 250(5):1591-1601.

Miao S, Liang C, Li J, Baker B, Luo L.  2021.  Polycistronic Artificial microRNA-Mediated Resistance to Cucumber Green Mottle Mosaic Virus in Cucumber.. Int J Mol Sci. 22(22)

Miao S, Liang C, Li J, Baker B, Luo L.  2021.  Polycistronic Artificial microRNA-Mediated Resistance to Cucumber Green Mottle Mosaic Virus in Cucumber.. Int J Mol Sci. 22(22)

Miao S, Liang C, Li J, Baker B, Luo L.  2021.  Polycistronic Artificial microRNA-Mediated Resistance to Cucumber Green Mottle Mosaic Virus in Cucumber.. Int J Mol Sci. 22(22)

Li F, Brunkard JO, Baker B.  2022.  LncRNA gets into the balancing act.. Cell Host Microbe. 30(8):1061-1063.

Lan H-J, Ran J, Wang W-X, Zhang L, Wu N-N, Zhao Y-T, Huang M-J, Ni M, Liu F, Cheng N et al..  2024.  Clathrin light chains negatively regulate plant immunity by hijacking the autophagy pathway.. Plant Commun. 5(8):100937.

Lan H-J, Ran J, Wang W-X, Zhang L, Wu N-N, Zhao Y-T, Huang M-J, Ni M, Liu F, Cheng N et al..  2024.  Clathrin light chains negatively regulate plant immunity by hijacking the autophagy pathway.. Plant Commun. 5(8):100937.

Lan H-J, Ran J, Wang W-X, Zhang L, Wu N-N, Zhao Y-T, Huang M-J, Ni M, Liu F, Cheng N et al..  2024.  Clathrin light chains negatively regulate plant immunity by hijacking the autophagy pathway.. Plant Commun. 5(8):100937.

Zhang Q, Wang J, Li Y, Tung J, Deng Y, Baker B, Dinesh-Kumar SP, Li F.  2024.  Conserved transcription factors NRZ1 and NRM1 regulate NLR receptor-mediated immunity.. Plant Physiol. 195(1):832-849.

Zhang Q, Wang J, Li Y, Tung J, Deng Y, Baker B, Dinesh-Kumar SP, Li F.  2024.  Conserved transcription factors NRZ1 and NRM1 regulate NLR receptor-mediated immunity.. Plant Physiol. 195(1):832-849.

Wang J, Zhang Q, Tung J, Zhang X, Liu D, Deng Y, Tian Z, Chen H, Wang T, Yin W et al..  2024.  High-quality assembled and annotated genomes of Nicotiana tabacum and Nicotiana benthamiana reveal chromosome evolution and changes in defense arsenals.. Mol Plant. 17(3):423-437.

Wang J, Zhang Q, Tung J, Zhang X, Liu D, Deng Y, Tian Z, Chen H, Wang T, Yin W et al..  2024.  High-quality assembled and annotated genomes of Nicotiana tabacum and Nicotiana benthamiana reveal chromosome evolution and changes in defense arsenals.. Mol Plant. 17(3):423-437.

Wang J, Zhang Q, Tung J, Zhang X, Liu D, Deng Y, Tian Z, Chen H, Wang T, Yin W et al..  2024.  High-quality assembled and annotated genomes of Nicotiana tabacum and Nicotiana benthamiana reveal chromosome evolution and changes in defense arsenals.. Mol Plant. 17(3):423-437.

Wang J, Zhang Q, Tung J, Zhang X, Liu D, Deng Y, Tian Z, Chen H, Wang T, Yin W et al..  2024.  High-quality assembled and annotated genomes of Nicotiana tabacum and Nicotiana benthamiana reveal chromosome evolution and changes in defense arsenals.. Mol Plant. 17(3):423-437.